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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4646032_4647533_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4646032 - 4647533
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTGGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCATTTGGACA
Flanking Amino Acid:
IDFRRGVPDCALSCEDTKEY
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
70.4
0.46
1.1
67.9
42.3
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
50.4
0
1.5
62.84
37.5

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869