About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46474272_46502089_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46474272 - 46502089
Intron Length:
27818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTACCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCTTTACAC
Flanking Amino Acid:
TPPTSPQAYQSTSGPPIWPG
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.7
0.62
0.8
75.6
34.3
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
67.4
0.53
1.7
79.33
36

Associated Gene:

Gene:
FOXN3
Ensembl Gene ID:
ENSAPLG00000009060
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032661
46404470 - 46502932
98463
ENSAPLT00000023394
46404470 - 46505020
100551
ENSAPLT00000009427
46404470 - 46502932
98463
ENSAPLT00000037952
46404419 - 46502132
97714