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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4647700_4648141_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4647700 - 4648141
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
TTTTCTTCTACT
Flanking Amino Acid:
LNSKTERCVERNECPCYFQG
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
70.5
0.51
1
72
33.1
Major PPT
83.3
0.75
0.8
78
29.1
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
66.3
0.59
1.9
88.46
36.4

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869