Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46502269_46504837_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

46502269 - 46504837

Intron Length:

2569

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGTCATAA

5'SS Class:

weak_major

3'SS Sequence:

GCTATGCCATTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AATAAAT

U12 Branch Point Sequence:

TACTGCTAAATA

Flanking Amino Acid:

LGGGSEAARQIKYLIFFLIL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.14

1.1

56.4

32.6

Major BPS

65.7

0.39

71.3

30.3

Major PPT

58.9

0.2

56.1

39.9

Minor 5ss

45.2

-0.5

2.8

54.9

Minor BPS

50.3

2.1

63.81

43.2

Associated Gene:

Gene:

FOXN3

Ensembl Gene ID:

ENSAPLG00000009060

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023394

46404470 - 46505020

100551