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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46594952_46596726_R

Intron Information:

Intron Rank:
139628
Intron Class:
major
Intron Phase:
Intron Coordinates:
46594952 - 46596726
Intron Length:
1775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTCTTCTAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
63
0.39
1.7
70.25
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022586
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024816
46593902 - 46617884
23983