Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46606996_46608214_R

Intron Information:

Intron Rank:

139631

Intron Class:

major

Intron Phase:

Intron Coordinates:

46606996 - 46608214

Intron Length:

1219

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTACGTATG

5'SS Class:

major

3'SS Sequence:

TTCATTTTAAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTCAT

U12 Branch Point Sequence:

TTCATTTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.42

1.1

66.6

44.8

Major BPS

69.6

0.49

1.3

73.6

41.8

Major PPT

68.6

0.42

1.1

71.4

37.4

Minor 5ss

39.5

-1.2

47.2

42.4

Minor BPS

61.3

0.35

1.4

68.54

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043410

46600468 - 46617884

17417

ENSAPLT00000025927

46602745 - 46617884

15140

ENSAPLT00000024816

46593902 - 46617884

23983