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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46643886_46694810_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46643886 - 46694810
Intron Length:
50925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCTCTTATAG
Flanking Amino Acid:
LPESVIPEAFREVDQDSDGC
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.8
0.74
0.7
77.5
30.6
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
56
0.05
1.8
65.88
41.6

Associated Gene:

Gene:
EFCAB11
Ensembl Gene ID:
ENSAPLG00000009076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009435
46643786 - 46706892
63107
ENSAPLT00000047845
46643786 - 46703596
59811
ENSAPLT00000038451
46643786 - 46703505
59720