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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4668791_4669440_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4668791 - 4669440
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTTTGTTATTT
Flanking Amino Acid:
VHVQMGHQWQGELTGLCGNF
Intron Amino Acid Position:
1076

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.6
0.82
0.9
84.6
36
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
50.7
0.1
2.2
75.8
41.6

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869