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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46696383_46698520_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46696383 - 46698520
Intron Length:
2138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATAA
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTATTTCCATT
Flanking Amino Acid:
VMSSVKPENSGILFEKFLDL
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
75.8
29
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.7
0.67
0.8
72.6
37.5
Minor 5ss
37.3
-1.4
3
47.4
47.9
Minor BPS
47.7
-0.1
1.9
71.94
39.8

Associated Gene:

Gene:
EFCAB11
Ensembl Gene ID:
ENSAPLG00000009076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038451
46643786 - 46703505
59720
ENSAPLT00000009435
46643786 - 46706892
63107
ENSAPLT00000047845
46643786 - 46703596
59811