About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46702086_46703445_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46702086 - 46703445
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGGCGAAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGGTTCTTAACG
Flanking Amino Acid:
KAGTATAAKQVFEVCDDDNK
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
54.4
43.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
20
-3.5
3.9
29.2
43.7
Minor BPS
74.6
0.64
1.3
71.67
41.3

Associated Gene:

Gene:
EFCAB11
Ensembl Gene ID:
ENSAPLG00000009076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038451
46643786 - 46703505
59720