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Intron Name: Anas_platyrhynchos_platyrhynchos_5_46712745_46715241_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

46712745 - 46715241

Intron Length:

2497

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCTCTT

5'SS Class:

weak_major

3'SS Sequence:

TTCCTTTCTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

CTGCAAATAACT

Flanking Amino Acid:

VIQEHDLSETRVYLLGSTPG

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.2

74.4

41.9

Major BPS

61.3

0.28

30.6

Major PPT

84.2

0.77

0.6

80.8

24.4

Minor 5ss

56.3

0.21

2.5

76.3

39.1

Minor BPS

45.3

-0.2

64.97

44.6

Associated Gene:

Gene:

TDP1

Ensembl Gene ID:

ENSAPLG00000015575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016275

46703660 - 46727242

23583