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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46717124_46717310_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46717124 - 46717310
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TTCCTCCATGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTCCTCCATG
Flanking Amino Acid:
LLKCDVPVHLVYPTVNNVRQ
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
67.2
0.39
1
68.4
31.2
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
58.5
0.12
2.1
71.5
41.9

Associated Gene:

Gene:
TDP1
Ensembl Gene ID:
ENSAPLG00000015575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016275
46703660 - 46727242
23583