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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4672108_4673189_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4672108 - 4673189
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTCTATTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTTTCTATTT
Flanking Amino Acid:
SVDWRSPRVCPYDCEYFNKA
Intron Amino Acid Position:
1207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.3
76.8
34.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.6
0.8
0.7
84.8
29.7
Minor 5ss
45.3
-0.5
2.8
58.8
40.3
Minor BPS
49.1
0.02
1.9
71.32
40.7

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869