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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46724872_46726663_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46724872 - 46726663
Intron Length:
1792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CCTTGCTGAAAT
Flanking Amino Acid:
FKKIAWFLVTSANLSKAAWG
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
49.9
0.07
2
69.82
46.7

Associated Gene:

Gene:
TDP1
Ensembl Gene ID:
ENSAPLG00000015575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016275
46703660 - 46727242
23583