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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46754474_46814923_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46754474 - 46814923
Intron Length:
60450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAA
Flanking Amino Acid:
YFVGTVVSTIGFGMTTPATV
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
72.4
0.7
1.2
78.49
31.1

Associated Gene:

Gene:
KCNK13
Ensembl Gene ID:
ENSAPLG00000001576
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001566
46754128 - 46815816
61689