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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4679181_4688649_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4679181 - 4688649
Intron Length:
9469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GGTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATGAGATTAACA
Flanking Amino Acid:
FRLSILFKLVDAKYKLISRS
Intron Amino Acid Position:
1362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
80.6
0.69
0.9
76.9
42.1
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
49.3
-0
2.1
63.87
42.1

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869