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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46845968_46846332_R

Intron Information:

Intron Rank:
136405
Intron Class:
major
Intron Phase:
Intron Coordinates:
46845968 - 46846332
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGCTC
5'SS Class:
major
3'SS Sequence:
CACACCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
60.6
44.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.8
0.33
0.9
56.8
33
Minor 5ss
34
-1.8
3.7
50.1
46.5
Minor BPS
51.2
0.12
2.1
80.84
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020819
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022522
46845332 - 46847090
1759