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Intron Name: Anas_platyrhynchos_platyrhynchos_5_46867685_46868080_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46867685 - 46868080

Intron Length:

396

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

CTTGTGATTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTGACCTAAAAT

Flanking Amino Acid:

GPDAASKLPLVTPHTQCRLK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

83.9

30.3

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

76.7

0.6

69.8

40.3

Minor 5ss

44.3

-0.6

3.1

64.1

47.4

Minor BPS

59.8

0.39

1.9

78.07

43.9

Associated Gene:

Gene:

PSMC1

Ensembl Gene ID:

ENSAPLG00000015830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037579

46865761 - 46874296

8536

ENSAPLT00000016507

46866508 - 46874111

7604