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Intron Name: Anas_platyrhynchos_platyrhynchos_5_46868892_46869089_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46868892 - 46869089

Intron Length:

198

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

ATGCTTGCATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

CTTCCTTTAACA

Flanking Amino Acid:

PGCSVLLNHKVHAVIGVLMD

Intron Amino Acid Position:

156

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.7

1.03

0.7

89.2

17.7

Major BPS

0.92

0.9

86.2

29.1

Major PPT

61.2

0.25

60.1

Minor 5ss

36.4

-1.5

2.9

48.7

47.5

Minor BPS

77.5

0.86

1.2

80.59

35.2

Associated Gene:

Gene:

PSMC1

Ensembl Gene ID:

ENSAPLG00000015830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037579

46865761 - 46874296

8536

ENSAPLT00000016507

46866508 - 46874111

7604