Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46869219_46869843_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46869219 - 46869843

Intron Length:

625

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTCTGA

5'SS Class:

major

3'SS Sequence:

TGTCATGATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAA

U12 Branch Point Sequence:

TGTTTATAAAAA

Flanking Amino Acid:

GLDNQIQEIKESVELPLTHP

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

60.5

40.9

Major BPS

78.6

0.71

78.6

Major PPT

68.7

0.42

1.1

62.2

43.2

Minor 5ss

49.4

-0

2.5

65.4

45.8

Minor BPS

-0

66.31

39.7

Associated Gene:

Gene:

PSMC1

Ensembl Gene ID:

ENSAPLG00000015830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037579

46865761 - 46874296

8536

ENSAPLT00000016507

46866508 - 46874111

7604