Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46869941_46870085_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

46869941 - 46870085

Intron Length:

145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCTTGG

5'SS Class:

weak_major

3'SS Sequence:

TCTTTGCAATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATTAC

U12 Branch Point Sequence:

TTCTTTGCAATT

Flanking Amino Acid:

GVILYGPPGTGKTLLAKAVA

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.2

62.3

44.7

Major BPS

0.42

1.1

38.5

Major PPT

67.7

0.4

67.8

Minor 5ss

54.4

0.15

2.1

67.3

43.8

Minor BPS

47.8

-0

2.1

70.72

41.5

Associated Gene:

Gene:

PSMC1

Ensembl Gene ID:

ENSAPLG00000015830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037579

46865761 - 46874296

8536

ENSAPLT00000016507

46866508 - 46874111

7604