Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46871623_46871742_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

46871623 - 46871742

Intron Length:

120

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGTGAGA

5'SS Class:

major

3'SS Sequence:

ACGCTGGATCCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

ATGGCCACAAAC

Flanking Amino Acid:

IGTKRYDSNSALIRPGRIDR

Intron Amino Acid Position:

300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.37

1.1

58.5

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

57.3

0.17

1.1

46.7

44.6

Minor 5ss

24.9

-2.9

3.1

30.9

42.6

Minor BPS

44.8

-0.4

1.9

55.56

42.2

Associated Gene:

Gene:

PSMC1

Ensembl Gene ID:

ENSAPLG00000015830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016507

46866508 - 46874111

7604