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Intron Name: Anas_platyrhynchos_platyrhynchos_5_46873396_46873976_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46873396 - 46873976

Intron Length:

581

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTGTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTAAC

U12 Branch Point Sequence:

GAACCAGTAACT

Flanking Amino Acid:

KDDLSGADIKAICTEAGLMA

Intron Amino Acid Position:

357

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.7

0.82

0.8

78.5

30.2

Major BPS

54.4

0.11

1.2

36.4

Major PPT

84.8

0.78

0.8

81.1

30.9

Minor 5ss

36.7

-1.5

2.5

Minor BPS

46.9

-0.1

2.2

66.26

43.2

Associated Gene:

Gene:

PSMC1

Ensembl Gene ID:

ENSAPLG00000015830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037579

46865761 - 46874296

8536

ENSAPLT00000016507

46866508 - 46874111

7604