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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46877510_46879667_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46877510 - 46879667
Intron Length:
2158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTGCCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTCATTTTACC
Flanking Amino Acid:
LLWRMYLNFLVLYMDAIEYF
Intron Amino Acid Position:
1106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.6
0.67
0.9
70
40.8
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
50.8
0.01
1.8
65.02
40.5

Associated Gene:

Gene:
NRDE2
Ensembl Gene ID:
ENSAPLG00000015870
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027263
46876972 - 46904343
27372