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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46882918_46883998_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46882918 - 46883998
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
TTCTTCGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTGTTTATTC
Flanking Amino Acid:
ICWLQYEISKVVQCLQTKNK
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.3
0.79
0.8
80.4
31.6
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
50.4
-0
2
65.17
41.7

Associated Gene:

Gene:
NRDE2
Ensembl Gene ID:
ENSAPLG00000015870
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034833
46876972 - 46904343
27372
ENSAPLT00000027263
46876972 - 46904343
27372
ENSAPLT00000016561
46876972 - 46904343
27372