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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4688768_4689671_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4688768 - 4689671
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TACTCTTCAACT
Flanking Amino Acid:
PLGQNCQAVPKVEGCIPVCP
Intron Amino Acid Position:
1401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
80
0.75
1
78.6
31
Major PPT
87.6
0.85
0.7
81.2
36.5
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
69.3
0.68
1.5
81.34
40.3

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869