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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46888108_46891396_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46888108 - 46891396
Intron Length:
3289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
CTTTCCTTTACA
Flanking Amino Acid:
PLPGTEEAMLAIFIQQCHFL
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
62
0.3
1
62.3
30.4
Major PPT
89.2
0.88
0.6
83.6
24.7
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
76.7
0.84
1.6
83.52
37

Associated Gene:

Gene:
NRDE2
Ensembl Gene ID:
ENSAPLG00000015870
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034833
46876972 - 46904343
27372
ENSAPLT00000027263
46876972 - 46904343
27372
ENSAPLT00000016561
46876972 - 46904343
27372