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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46892452_46893927_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46892452 - 46893927
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATAT
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ATATGTTTAACT
Flanking Amino Acid:
YKSLYRGDIARYKRKGESCL
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71.2
35.1
Major BPS
70
0.5
1
67
39.8
Major PPT
82.5
0.73
0.9
87.3
23.7
Minor 5ss
37.9
-1.4
3.4
55.8
48.4
Minor BPS
68.6
0.66
1.7
83.08
38

Associated Gene:

Gene:
NRDE2
Ensembl Gene ID:
ENSAPLG00000015870
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034833
46876972 - 46904343
27372
ENSAPLT00000027263
46876972 - 46904343
27372
ENSAPLT00000016561
46876972 - 46904343
27372