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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46894078_46895362_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46894078 - 46895362
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTACT
5'SS Class:
major
3'SS Sequence:
TCGTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATAATTAGAATA
Flanking Amino Acid:
GRNREKEAAANLGDKTSNLT
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79.9
32.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
86.1
0.81
0.8
84.6
30.3
Minor 5ss
46.2
-0.4
2.5
61.3
37
Minor BPS
44.5
-0.4
1.6
52.92
32.3

Associated Gene:

Gene:
NRDE2
Ensembl Gene ID:
ENSAPLG00000015870
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034833
46876972 - 46904343
27372
ENSAPLT00000027263
46876972 - 46904343
27372
ENSAPLT00000016561
46876972 - 46904343
27372