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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46895585_46897463_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46895585 - 46897463
Intron Length:
1879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAATAT
5'SS Class:
major
3'SS Sequence:
CCTTTCCAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATATATATACTC
Flanking Amino Acid:
NSTPEKSPLIRTTSRSELSG
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71
35.5
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
70.7
0.47
0.9
67
33
Minor 5ss
37.6
-1.4
3.5
55.2
49
Minor BPS
44.1
-0.4
1.9
55.38
36.7

Associated Gene:

Gene:
NRDE2
Ensembl Gene ID:
ENSAPLG00000015870
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027263
46876972 - 46904343
27372
ENSAPLT00000016561
46876972 - 46904343
27372
ENSAPLT00000034833
46876972 - 46904343
27372