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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4689752_4690592_F

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4689752 - 4690592
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGTTTG
5'SS Class:
weak_major
3'SS Sequence:
TGTCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TGTGTCTTATTT
Flanking Amino Acid:
ITQRCVYFEDCIEPADDSPP
Intron Amino Acid Position:
1428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
64.8
41.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
84.1
0.77
0.8
81.7
34.6
Minor 5ss
59.9
0.33
2.3
76.2
39.3
Minor BPS
59.3
0.37
1.7
75.8
41.6

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869