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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46938537_46938628_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46938537 - 46938628
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAATA
5'SS Class:
major
3'SS Sequence:
ATTCTTCGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTATTCTAAAAT
Flanking Amino Acid:
MADQLTEEQIA
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
75.4
33.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.5
0.55
0.9
70.3
35.7
Minor 5ss
37.3
-1.4
3
46.5
42.9
Minor BPS
63.7
0.51
1.8
81.73
39.5

Associated Gene:

Gene:
CALM1
Ensembl Gene ID:
ENSAPLG00000016568
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036552
46938142 - 46944142
6001