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Intron Name: Anas_platyrhynchos_platyrhynchos_5_46938660_46939518_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46938660 - 46939518

Intron Length:

859

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGCCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAA

U12 Branch Point Sequence:

TGTCACTAAACA

Flanking Amino Acid:

ADQLTEEQIAEFKEAFSLFD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

81.4

30.6

Major BPS

65.2

0.38

0.9

65.5

27.9

Major PPT

78.4

0.64

0.8

70.5

36.3

Minor 5ss

37.4

-1.4

3.3

49.4

41.4

Minor BPS

56.7

0.21

1.9

71.03

40.5

Associated Gene:

Gene:

CALM1

Ensembl Gene ID:

ENSAPLG00000016568

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036552

46938142 - 46944142

6001