Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46942088_46943501_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

46942088 - 46943501

Intron Length:

1414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTCTTG

5'SS Class:

weak_major

3'SS Sequence:

ACTTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCATAAT

U12 Branch Point Sequence:

TTGATCATAATC

Flanking Amino Acid:

IREAFRVFDKDGNGYISAAE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

64.2

42.4

Major BPS

75.2

0.63

1.1

74.5

36.6

Major PPT

80.7

0.69

0.8

74.3

30.1

Minor 5ss

62.7

0.43

2.2

73.2

43.6

Minor BPS

56.7

0.19

1.6

67.54

38.2

Associated Gene:

Gene:

CALM1

Ensembl Gene ID:

ENSAPLG00000016568

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036552

46938142 - 46944142

6001