About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46943638_46943868_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46943638 - 46943868
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
AAATTAGTGACT
Flanking Amino Acid:
IDGDGQVNYEEFVQMMTAK*
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
45
-0.3
2.2
63.67
40.3

Associated Gene:

Gene:
CALM1
Ensembl Gene ID:
ENSAPLG00000016568
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036552
46938142 - 46944142
6001