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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4696344_4697830_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4696344 - 4697830
Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTAAT
5'SS Class:
major
3'SS Sequence:
GCTTTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GTTTATATATTT
Flanking Amino Acid:
ISIHVLDCRMNNSNSTSLCL
Intron Amino Acid Position:
2812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
79.7
35.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
78.3
0.64
0.8
72.3
32.5
Minor 5ss
43.1
-0.8
2.7
56.7
42
Minor BPS
47.4
-0.1
2
70.57
40.5

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869