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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46975075_46985084_F

Intron Information:

Intron Rank:
132446
Intron Class:
major
Intron Phase:
Intron Coordinates:
46975075 - 46985084
Intron Length:
10010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
TGTCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GCATTTTTAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.3
39.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.7
0.76
0.8
80.8
36.5
Minor 5ss
32.5
-2
3.5
39.8
46.2
Minor BPS
52.9
0.17
1.5
64.55
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021168
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027952
46974860 - 46988278
13419