Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47094790_47100556_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47094790 - 47100556

Intron Length:

5767

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

ATTACTTGTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

FHGFYSPFSVCSVHATSIAA

Intron Amino Acid Position:

631

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

76.5

38.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.56

41.3

Minor 5ss

-1.1

2.9

57.4

41.1

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

TTC7B

Ensembl Gene ID:

ENSAPLG00000016070

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027405

47061337 - 47236315

174979

ENSAPLT00000020130

47087944 - 47179505

91562

ENSAPLT00000016803

47087401 - 47175116

87716

ENSAPLT00000038034

47061337 - 47236315

174979