Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47100608_47107836_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47100608 - 47107836

Intron Length:

7229

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAACA

5'SS Class:

strong_major

3'SS Sequence:

GATTTGTTCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGGATTTTAATT

Flanking Amino Acid:

TLPDFSDPETGNPSDAYFHG

Intron Amino Acid Position:

614

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.8

83.4

27.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

63.7

0.31

1.1

Minor 5ss

33.8

-1.9

2.9

41.4

44.7

Minor BPS

63.5

0.5

1.3

72.55

Associated Gene:

Gene:

TTC7B

Ensembl Gene ID:

ENSAPLG00000016070

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038034

47061337 - 47236315

174979

ENSAPLT00000020130

47087944 - 47179505

91562

ENSAPLT00000016803

47087401 - 47175116

87716