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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47107935_47112020_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47107935 - 47112020
Intron Length:
4086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TACTTCATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATCTTAATA
Flanking Amino Acid:
WKSCYNLTNPSDSGRGSSLL
Intron Amino Acid Position:
1172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.9
0.67
0.9
73.4
35.5
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
73.7
0.74
1.2
77.02
33.5

Associated Gene:

Gene:
TTC7B
Ensembl Gene ID:
ENSAPLG00000016070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027405
47061337 - 47236315
174979
ENSAPLT00000020130
47087944 - 47179505
91562
ENSAPLT00000016803
47087401 - 47175116
87716
ENSAPLT00000042972
47061337 - 47236315
174979
ENSAPLT00000002719
47061337 - 47236315
174979
ENSAPLT00000038034
47061337 - 47236315
174979