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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47133309_47134541_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47133309 - 47134541
Intron Length:
1233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTTTTTAACA
Flanking Amino Acid:
FALSLMAAGKSARAVKVLKE
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.7
0.62
1
73.8
40
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
75.1
0.78
1.1
76.87
34.2

Associated Gene:

Gene:
TTC7B
Ensembl Gene ID:
ENSAPLG00000016070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027405
47061337 - 47236315
174979
ENSAPLT00000020130
47087944 - 47179505
91562
ENSAPLT00000016803
47087401 - 47175116
87716
ENSAPLT00000042972
47061337 - 47236315
174979
ENSAPLT00000002719
47061337 - 47236315
174979
ENSAPLT00000038034
47061337 - 47236315
174979