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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47142231_47145711_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47142231 - 47145711
Intron Length:
3481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
TTGTTTTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCTGCTTAAAT
Flanking Amino Acid:
SRRPRVYTGENIFCPQENTE
Intron Amino Acid Position:
866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.2
37
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
75.6
0.58
1
73.3
40.9
Minor 5ss
55.7
0.19
2.3
66.6
38.8
Minor BPS
67.9
0.64
1.9
85.06
41.4

Associated Gene:

Gene:
TTC7B
Ensembl Gene ID:
ENSAPLG00000016070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020130
47087944 - 47179505
91562
ENSAPLT00000016803
47087401 - 47175116
87716
ENSAPLT00000042972
47061337 - 47236315
174979
ENSAPLT00000002719
47061337 - 47236315
174979
ENSAPLT00000038034
47061337 - 47236315
174979
ENSAPLT00000027405
47061337 - 47236315
174979