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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47148085_47161235_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47148085 - 47161235
Intron Length:
13151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATGTTTATAT
Flanking Amino Acid:
QRAHVLYFKNGNLTRGVGRF
Intron Amino Acid Position:
782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.6
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.4
0.66
1
73.8
40
Minor 5ss
43.4
-0.7
3.2
57.2
46.9
Minor BPS
49.7
0.06
2.1
73.8
43.1

Associated Gene:

Gene:
TTC7B
Ensembl Gene ID:
ENSAPLG00000016070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027405
47061337 - 47236315
174979
ENSAPLT00000020130
47087944 - 47179505
91562
ENSAPLT00000016803
47087401 - 47175116
87716
ENSAPLT00000042972
47061337 - 47236315
174979
ENSAPLT00000002719
47061337 - 47236315
174979
ENSAPLT00000038034
47061337 - 47236315
174979