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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47212440_47213058_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47212440 - 47213058
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTATGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTGTTAATA
Flanking Amino Acid:
CDLWSLGVILYTMLSGQVPF
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.3
0.52
1
69.3
40.6
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
62.5
0.39
2
75.34
36.5

Associated Gene:

Gene:
TTC7B
Ensembl Gene ID:
ENSAPLG00000016070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038034
47061337 - 47236315
174979
ENSAPLT00000027405
47061337 - 47236315
174979
ENSAPLT00000002719
47061337 - 47236315
174979
ENSAPLT00000042972
47061337 - 47236315
174979