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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47217896_47221094_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47217896 - 47221094
Intron Length:
3199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAATA
5'SS Class:
major
3'SS Sequence:
TCAATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
GTTTGCTCAATT
Flanking Amino Acid:
QEYAVKIISKRMEANTQREI
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
75.8
33.1
Major BPS
60.3
0.26
1
65.5
28
Major PPT
81
0.7
0.9
72.8
41.9
Minor 5ss
42.5
-0.8
3
57.4
46.9
Minor BPS
60.8
0.42
2
81.06
40.8

Associated Gene:

Gene:
TTC7B
Ensembl Gene ID:
ENSAPLG00000016070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002719
47061337 - 47236315
174979
ENSAPLT00000042972
47061337 - 47236315
174979
ENSAPLT00000038034
47061337 - 47236315
174979
ENSAPLT00000027405
47061337 - 47236315
174979