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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47221229_47221954_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47221229 - 47221954
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
AGTTTCCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AGTTTCCTAACA
Flanking Amino Acid:
TTIARSAMMKDSPFFQHYEL
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
72.7
0.51
1
67
38.7
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
65.6
0.49
1.6
75.28
35.4

Associated Gene:

Gene:
TTC7B
Ensembl Gene ID:
ENSAPLG00000016070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042972
47061337 - 47236315
174979
ENSAPLT00000038034
47061337 - 47236315
174979
ENSAPLT00000027405
47061337 - 47236315
174979
ENSAPLT00000002719
47061337 - 47236315
174979