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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47225665_47232029_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47225665 - 47232029
Intron Length:
6365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTTTGTTTTATA
Flanking Amino Acid:
GEKNSQAEISRRILKSEPPY
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
81.9
0.72
0.8
76.5
37.7
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
50.5
0.01
2
67.32
39.4

Associated Gene:

Gene:
TTC7B
Ensembl Gene ID:
ENSAPLG00000016070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038034
47061337 - 47236315
174979
ENSAPLT00000027405
47061337 - 47236315
174979
ENSAPLT00000002719
47061337 - 47236315
174979
ENSAPLT00000042972
47061337 - 47236315
174979