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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47232134_47235409_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47232134 - 47235409
Intron Length:
3276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGTATCATAACT
Flanking Amino Acid:
VRGGDTGHDKAVDWWSVGVL
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
89.3
0.88
0.7
84.3
30.8
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
64.8
0.54
1.7
82.55
38

Associated Gene:

Gene:
TTC7B
Ensembl Gene ID:
ENSAPLG00000016070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042972
47061337 - 47236315
174979
ENSAPLT00000038034
47061337 - 47236315
174979
ENSAPLT00000027405
47061337 - 47236315
174979
ENSAPLT00000002719
47061337 - 47236315
174979