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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_47235494_47236187_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47235494 - 47236187
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGATATGAATT
Flanking Amino Acid:
VQHDLMLTSKNERAYSFCGT
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
69.5
41.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
84.2
0.77
0.9
81.2
36.5
Minor 5ss
33.9
-1.8
3
44.7
43.1
Minor BPS
49.8
0.07
1.7
70.49
40.5

Associated Gene:

Gene:
TTC7B
Ensembl Gene ID:
ENSAPLG00000016070
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042972
47061337 - 47236315
174979
ENSAPLT00000038034
47061337 - 47236315
174979
ENSAPLT00000027405
47061337 - 47236315
174979
ENSAPLT00000002719
47061337 - 47236315
174979