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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4724269_4725513_F

Intron Information:

Intron Rank:
133379
Intron Class:
major
Intron Phase:
Intron Coordinates:
4724269 - 4725513
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAGC
5'SS Class:
major
3'SS Sequence:
CCTGTGTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTACCTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.1
67.1
44.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.4
0.57
0.9
67.9
37.7
Minor 5ss
38.3
-1.3
3.1
51.6
45.2
Minor BPS
70
0.71
1.7
85.8
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021728
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019558
4723564 - 4725903
2340